This is an interesting Idea. I can see a few different possibilities depending where it's mounted. If it's at the end of the exhaust, all I think it will do is just force more air flow throughout and probably stoke your fire and drive temps up. If you mounted it underneath the tuning plates about half way through the smoke chamber, it would definitely pull more air from the firebox, but it will be very very hot air, and most likely burn up a fan not designed for high heat. Either way it's all a matter of air flow. The inside of a working smoker also is an environment on its own and the flow from intake to exhaust in my opinion is important especially for flavor. If there is fast moving air in the smoke chamber It may now allow smoke to flavor properly.
Also I was wondering about the tuning plates, I just have one, more of a deflector shield really in my SNP. It's made of sheet metal and is about 16 inches long and I just curved it enough to cover the intake. I have a water pan I put directly above it on the grate too to help keep a little cooler on that end. I was going to post a picture but cant find it at the moment, It's in this thread
http://www.smokingmeatforums.com/t/111377/hello-from-wi. Anyways it works great, I can hold within 10-15 degrees from end to end. I dont really know how the ceramic behaves in a hot environment, but I think maybe its possible that it is getting hot and radiating heat upward which could be causing your difficulty. Before you get too in depth with the fan I would really experiment with a few variations on the tuning plates and see if that helps first.
Have fun!