Starting to generate some participation on this Pit problem issue that's great, the more the merrier!
The only thing better than pics to try and solve this issue, would be to stand right in front of it and be able to look it all over. So back to looking at the pics we go! LOL
My take on this issue would be this, IMO More intake air isn't the answer. Reason why is this, with the door wide open you should have all the air you need for the fire to burn and burn as hot as you would like it to burn. IMO, The problem is a thing called Draw. The pit doesn't draw the heat and smoke through the chambers even and consistently to have more of a regulated constant temperature for proper cooking and or smoking.
My Theory and or observation on how a wood stove operates correctly is this. First, an airtight burn chamber or as close to an airtight burn chamber as you can have the better. Next for the fire to Burn correctly you must have an air intake and an exhaust out.
Air intake whatever size you would like, needs to be adjustable. let's say a 4" round hole with a 5" round plate that will swing over your 4" hole to adjust it. 4" full open or 1/2, 1/4, or close, whatever. Just move the 5" plate over your 4" to where you basically want your fire to burn at. Full 4" open hole is your highest air adjustment for your fire to burn the hottest it can.
Next and most importantly, the exhaust out! Your exhaust needs to be larger than your air intake. 4"air hole in, 5" or better yet 6" exhaust chimney out. Taller the exhaust stack the better for the Draw factor of your burned exhaust gasses out from your burn chamber.
Next the damper in your exhaust stack. This is a flat plate that is inside your 6" stack and can be adjusted to wide open, closed or anywhere in the middle to control the flow of your exhaust gasses leaving your burn chamber.
Now for the theory and understanding behind how everything works together. Oxygenated air molecules, colder air temps means these air molecules are closer together, when heated they expand and move away from each other and take up more room. This is the one reason it helps to have a large diameter 6"exhaust stack over the same size 4" diameter cold air intake hole.
With a sealed airtight burn chamber having just the 4" diameter intake hole as the ONLY source of air to feed your fire and a 6" exhaust stack out with damper wide open, you can get your fire to roar with a rocketing type sound. This is why a chimney flue pipe, exhaust temp gauge is an important tool to have on a wood/coal stove. This makes sure you don't let your exhaust chimney temp gasses become too hot and then you will run into a possible chimney fire situation from any Creosote build up you may have in your pipe?
Once again in theory you can have your 4" intake hole wide open to give your fire all the oxygen it needs for the fire to burn.Wide open air intake is not an issue with a airtight burn chamber.The damper is allowing you to control the DRAW of the heat and smoke from your burn chamber to flow through your RF smoker and out your exhaust stack, at the rate you want it to.
Having an airtight burn chamber is the key, whatever air that comes into the burn chamber and is heated rapidly and expands, has to go somewhere. Since heated air rises that is the direction it will flow the best. A chimney flue pipe will Draw and flow at a 45 degree angle, Straight up and out is the best for Max Draw of your exhaust out.
So now back to 56's issue with his pit. I am thinking that middle warming box might be part of the issue because of the hole that goes into the main chamber at the top and straight up and out the stack. The heat and smoke is going to want to take the easiest path out, so the heat and smoke is not traveling on the bottom under your meat like you would like it to and then go out your stack. Correct on this 56?
I hope my brief explanation on Draw and flow helps you look at your pit to trace the path your heat and smoke travels out, so maybe you can spot your problem? I am thinking maybe that top hole needs to be blocked off into your main cooking chamber so your pit Draws the heat and smoke like a RF. keep asking questions we will GET-R-DONE and figured out at some point! LOL