I asked the question at foodsafety.gov, part of the CDC. Here is the response
vince: I participate in a forum on smoking meats bbq style. The question has come up about the safety of inserting a temperature probe into to meat when you if put it on the gril versus waiting for the outside temperature of the meat to warm up. The concern is that inserting the probe into the meat when it is cold will push bacteria from the surface of the meat into the interior of the meat causing a food safety issue. What you advise?
Ask Karen: Hi Vince. give me a minute to read your question correctly.
Ask Karen: Well, the bacteria would be killed once the internal temperature of the meat reaches a safe temperature, depending on the type of meat.
Ask Karen: Does that make sense to you or am I missing something about the smoking process you are talking about.
vince: With bbq, we often cook to over 200 degrees internal temperature. At what temp would the bacteria be killed?
Ask Karen: Oh, okay. Bacteria in beef, veal, lamb and pork is killed at 145 (with a 3 minute rest time) bacteria in poultry is killed at 165. 200 would definitely kill the bacteria. You are cooking the meat for a long time right. Low and slow, but the meat gets to a high temp.
Ask Karen: Do you use a water pan (steam) in this process?
vince: Sometimes we do.
vince: Yes, low and slow as well
Ask Karen: Okay, just checking. the steam is a factor in destroying bacteria too. But the final end temp should be at least 145 for red meat, 165 for poultry. If the temp of any meat you BBQ or smoke gets to i200, that's is definitely safe and any bacteria would be destroyed.
This is from our government, how can it be wrong?